◆ 膜貫通タンパク質データ集(Jmol版) ◆
英語版Chime版βバレル型膜タンパク質データ集メニュー
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《 初期表示は2at9 》

※本データ集は,SCOP (Structural Classification of Proteins)Class: Membrane and cell surface proteins and peptidesに収録されているデータの中から,SOSUI WWW ServerPSBとSOSUIを利用した演習参照)で膜貫通領域をもつと推定されるデータを抽出して掲載し,その膜貫通部分(主としてα-helix構造)を選択して表示の変更ができるようにしたものです。h1〜で各領域を,h_allで全領域を選択して右下フレームのボタンで各種表示の指定をすることが可能です。一部のデータでt1〜およびt_allとあるのはTMHMMで求めた予測貫通部分です。
 なお,膜貫通タンパク質には,細胞膜に存在する受容体やイオンチャネルなど,膜貫通部分がα-helix構造を持つもののほかに,β-sheetで形成されるβバレル構造を有するタンパク質(PDB部分データリストの1qd5,1t16_Aなど)等もありますが,SOSUIではβ-sheet領域を検出できないので,ここでは省略します。詳細は成書(例えば,「細胞の分子生物学 第4版」,pp.593-614)やWeb情報(例えば,Membrane Proteins of Known Structureなど)を参照してください。

1ap9PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Photoreceptor]
    X-Ray Structure Of Bacteriorhodopsin From Microcrystals Grown In Lipidic Cubic Phases.

1ar1のChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h11 h12 h_all [Complex (Oxidoreductase/Antibody)]
    Structure At 2.7 Angstrom Resolution Of The Paracoccus Denitrificans Two-Subunit Cytochrome C Oxidase Complexed With An Antibody Fv Fragment.

1at9PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Photoreceptor]
    Structure Of Bacteriorhodopsin At 3.0 Angstrom Determined By Electron Crystallography.

2at9PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Photoreceptor]
    Structure Of Bacteriorhodopsin At 3.0 Angstrom By Electron Crystallography.

1bm1PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Photoreceptor]
    Crystal Structure Of Bacteriorhodopsin In The Light-Adapted State.

1brdPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Photoreceptor]
    Model for the structure of bacteriorhodopsin based on high-resolution electron cryo-microscopy.

2brdPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Photoreceptor]
    Crystal Structure Of Bacteriorhodopsin In Purple Membrane.

1brrのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Proton Transport]
    X-Ray Structure Of The Bacteriorhodopsin Trimer/Lipid Complex.

1brxPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Proton Pump]
    Bacteriorhodopsin/Lipid Complex.

1c3wPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Ion Transport]
    Bacteriorhodopsin/Lipid Complex At 1.55 A Resolution.

1c8rPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Ion Transport]
    Bacteriorhodopsin D96M Br State At 2.0 A Resolution.

1c8sPDB〉 h1 h2 h3 h4 h5 h6 h_all [Ion Transport]
    Bacteriorhodopsin D96N Late M State Intermediate.

1cwqのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Ion Transport]
    M Intermediate Structure Of The Wild Type Bacteriorhodopsin In Combination With The Ground State Structure.

1dze*PDBh1 h2 h3 h4 h5 h6 h7 h_all [Bacteriorhodopsin]
    Structure Of The M Intermediate Of Bacteriorhodopsin Trapped At 100K.

1e0pのChain A(基底状態)*資料PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Photoreceptor] 関連参考情報
    L Intermediate Of Bacteriorhodopsin.

1e12PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Ion Pump]
    Halorhodopsin, A Light-Driven Chloride Pump.

1ehkのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h11 h12 h13 h_all [Oxidoreductase]
    Crystal Structure Of The Aberrant Ba3-Cytochrome-C Oxidase From Thermus Thermophilus.

1eulPDBh1 h2 h3 h4 h5 h6 h7 h8 h9 h_all [Hydrolase | Caポンプ]
    Crystal Structure Of Calcium ATPase With Two Bound Calcium Ions.

1f4zPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Proton Transport, Membrane Protein]
    Bacteriorhodopsin-M Photointermediate State Of The E204Q Mutant At 1.8 Angstrom Resolution.

1f50PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Proton Transport, Membrane Protein]
    Bacteriorhodopsin-Br State Of The E204Q Mutant At 1.7 Angstrom Resolution.

1f88のChain A 〈資料PDBh1 h2 h3 h4 h5 h6 h7 h_allt1 t2 t3 t4 t5 t6 t7 t_all [Signaling Protein]
    Crystal Structure Of Bovine Rhodopsin.

1fbbPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Proton Transport]
    Crystal Structure Of Native Conformation Of Bacteriorhodopsin.

1fbkPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Proton Transport]
    Crystal Structure Of Cytoplasmically Open Conformation Of Bacteriorhodopsin.

1fftのChain A 〈PDB〉 h2(h1なし) h3 h4 h5 h6 h7 h8 h9 h10 h11 h12 h13(h14-15なし) h_all(h2-13) [Oxidoreductase]
    The Structure Of Ubiquinol Oxidase From Escherichia Coli.

1fqyPDBh1 h2 h3 h4 h5 h_all [Membrane Protein | 2003年ノーベル化学賞 | アクアポリン]
    Structure Of Aquaporin-1 At 3.8 Å Resolution By Electron Crystallography.

1fx8PDB〉 h1 h2 h3 h4 h5 h6 h_all [Membrane Protein]
    Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) With Substrate Glycerol.

1gu8PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Photoreceptor]
    Sensory Rhodopsin U.

1guePDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Photoreceptor]
    Sensory Rhodopsin U.

1h2sのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Menbrane Protein Complex]
    Molecular Basis Of Transmenbrane Signalling By Sensory Rhodopsin U-Transducer Complex.

1h68PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Photoreceptor]
    Sensory Rhodopsin U.

1h6iPDB〉 h1 h2 h3 h4 h5 h_all [Membrane Protein]
    A Refined Structure Of Human Aquaporin 1.

1hzxのChain A〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Signaling Protein]
    Crystal Structure Of Bovine Rhodopsin.

1ih5PDB〉 h1 h2 h3 h4 h5 h_all [Membrane Protein]
    Crystal Structure Of Aquaporin-1.

1iw6PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Proton Transport]
    Crystal Structure Of The Ground State Of Bacteriorhodopsin.

1iwoのChain A 〈PDBeProtSh1 h2 h3 h4 h5 h6 h7 h8 h9 h_all  [Hydrolase | カルシウムATPアーゼ]
    Crystal Structure Of The Sr Ca2+-ATPase In The Absence Of Ca2+.

1ixfPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Proton Transport]
    Crystal Structure Of The K Intermediate Of Bacteriorhodopsin.

1j4n*(チャネル内)PDBh1 h2 h3 h4 h5 h_allt1 t2 t3 t4 t5 t6 t_all [Membrane Protein | アクアポリン]
    Crystal Structure Of The Aqp1 Water Channel.

1jb0のChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Photosynthesis]
    Crystal Structure Of Photosystem I: A Photosynthetic Reaction Center and Core Antenna System From Cyanobacteria.
※1jb0の全体構造

1jfpPDBh1 h2 h3 h4 h5 h6 h7 h_all [Signaling Protein, Membrane Protein]
    Structure Of Bovine Rhodopsin (Dark Adapted).

1jgj*資料PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Signaling Protein]
    Crystal Structure Of Sensory Rhodopsin U At 2.4 Angstroms: Insights Into Color Tuning and Transducer Interaction.

1jv6PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Ion Transport]
    Bacteriorhodopsin D85S/F219L Double Mutant At 2.00 Angstrom Resolution.

1jv7PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Ion Transport]
    Bacteriorhodopsin O-Like Intermediate State Of The D85S Mutant At 2.25 Angstrom Resolution.

1kg8PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Proton Transport]
    X-Ray Structure Of An Early-M Intermediate Of Bacteriorhodopsin.

1kg9PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Proton Transport]
    Structure Of A "Mock-Trapped" Early-M Intermediate Of Bacteriorhosopsin.

1kgbPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Lyase (Aldehyde) Proton Transport]
    Structure Of Ground-State Bacteriorhodopsin.

1kjuPDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h_all [Hydrolase]
    Ca2+-ATPase In The E2 State.

1kmeのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Membrane Protein]
    Crystal Structure Of Bacteriorhodopsin Crystallized From Bicelles.

1kpkのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h_all [Membrane Protein]
    Crystal Structure Of The Clc Chloride Channel From E. Coli.

1kplのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h_all [Membrane Protein]
    Crystal Structure Of The Clc Chloride Channel From S. Typhimurium.

1l0mPDB〉 h1 h2 h3 h4 h5 h6 h_all [Proton Transport]
    Solution Structure Of Bacteriorhodopsin.

1l7vのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h_all [Transport Protein/Hydrolase]
    Bacterial Abc Transporter Involved In B12 Uptake.

1l9hのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Signaling Protein]
    Crystal Structure Of Bovine Rhodopsin At 2.6 Angstroms Resolution.

1ldaPDB〉 h1 h2 h3 h4 h5 h6 h_all [Transport Protein]
    Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Without Substrate Glycerol.

1ldfPDB〉 h1 h2 h3 h4 h5 h6 h_all [Transport Protein]
    Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Mutation W48F, F200T.

1ldiPDB〉 h1 h2 h3 h4 h5 h6 h_all [Transport Protein]
    Crystal Structure Of The E. Coli Glycerol Facilitator (Glpf) Without Substrate Glycerol.

1ln6PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Membrane Protein]
    Structure Of Bovine Rhodopsin (Metarhodopsin U).

1m0kPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Ion Transport]
    Bacteriorhodopsin K Intermediate At 1.43 A Resolution.

1m0lPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Ion Transport]
    Bacteriorhodopsin/Lipid Complex At 1.47 A Resolution.

1m0mPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Ion Transport]
    Bacteriorhodopsin M1 Intermediate At 1.43 A Resolution.

1m56のChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h11 h12 h_all [Oxidoreductase]
    Structure Of Cytochrome C Oxidase From Rhodobactor Sphaeroides (Wild Type).

1m57のChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h11 h12 h_all [Oxidoreductase]
    Structure Of Cytochrome C Oxidase From Rhodobacter Sphaeroides (Eq(I-286) Mutant)).

1mgyPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Proton Transport]
    Structure Of The D85S Mutant Of Bacteriorhodopsin With Bromide Bound.

1o0aPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Proton Transport]
    Bacteriorhodopsin L Intermediate At 1.62 A Resolution.

1occのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h11 h12 h_all [Oxidoreductase (Cytochrome(C)-Oxygen)]
    Structure Of Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State.

2occのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h11 h12 h_all [Oxidoreductase]
    Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State.

1ocoのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h11 h12 h_all [Oxidoreductase]
    Bovine Heart Cytochrome C Oxidase In Carbon Monoxide-Bound State.

1ocrのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h11 h12 h_all [Oxidoreductase]
    Bovine Heart Cytochrome C Oxidase In The Fully Reduced State.

1oczのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h11 h12 h_all [Oxidoreductase]
    Bovine Heart Cytochrome C Oxidase In Azide-Bound State.

1otsのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h_all [Membrane Protein]
    Structure Of The Escherichia Coli Clc Chloride Channel and Fab Complex.

1ottのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h_all [Membrane Protein]
    Structure Of The Escherichia Coli Clc Chloride Channel E148A Mutant and Fab Complex.

1otuのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h_all [Membrane Protein]
    Structure Of The Escherichia Coli Clc Chloride Channel E148Q Mutant and Fab Complex.

1oy8PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h11 h_all [Membrane Protein]
    Structural Basis Of Multiple Drug Binding Capacity Of The Acrb Multidrug Efflux Pump.

1oy9PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h11 h_all [Membrane Protein]
    Structural Basis Of Multiple Drug Binding Capacity Of The Acrb Multidrug Efflux Pump.

1oydPDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h11 h_all [Membrane Protein]
    Structural Basis Of Multiple Binding Capacity Of The Acrb Multidrug Efflux Pump.

1oyePDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h11 h_all [Membrane Protein]
    Structural Basis Of Multiple Binding Capacity Of The Acrb Multidrug Efflux Pump.

1p8hPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Proton Transport]
    Bacteriorhodopsin M1 Intermediate Produced At Room Temperature.

1p8iPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Proton Transport]
    F219L Bacteriorhodopsin Mutant.

1p8uPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Proton Transport]
    Bacteriorhodopsin N' Intermediate At 1.62 A Resolution.

1pf4のChain A・B 〈PDB〉 h1 h2 h3 h4 h5 h6 h_all [Lipid Transport]
    Structure Of Msba From Vibrio Cholera: A Multidrug Resistance Abc Transporter Homolog In A Closed Conformation.

1qhjPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Photoreceptor]
    X-Ray Structure Of Bacteriorhodopsin Grown In Lipidic Cubic Phases.

1qkoPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Photoreceptor]
    High Resolution X-Ray Structure Of An Early Intermediate In The Bacteriorhodopsin Photocycle.

1qkpPDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Photoreceptor]
    High Resolution X-Ray Structure Of An Early Intermediate In The Bacteriorhodopsin Photocycle.

1qleのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h8 h9 h10 h11 h12 h_all [Complex (Oxidoreductase/Antibody)]
    Cryo-Structure Of The Paracoccus Denitrificans Four-Subunit Cytochrome C Oxidase In The Completely Oxidized State Complexed With An Antibody Fv Fragment.

1qm8PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Photoreceptor]
    Structure Of Bacteriorhodopsin At 100 K.

1uazのChain A 〈PDB〉 h1 h2 h3 h4 h5 h6 h7 h_all [Proton Transport]
    Crystal Structure Of Archaerhodopsin-1.

バックボーン 二次構造
全選択 タンパク質選択 DNA/RNA選択 同backbone選択 リガンド選択 HB選択($印のみ) (*印のみ)
空間充填 球棒 球10% 球30% 球40% 球60% スティック スティック(太) 針金 消去
アミノ色 Chain色 CPK色 ‖ Jmol色 Rasmol色 ‖ 濃赤 濃青  ピンク 濃ピンク   
糖鎖別着色(#印のみ)GalGlcManFucXylSiaGalNAcGlcNAcGlcAAsn,Ser,Thr選択 | Asn Ser Thr
酸性・中性・塩基性区別 極性・非極性区別 疎水性インデックス順 I/O値順(特性基 R) 等電点順 コンホメーション選択性(αヘリックスβストランド
水素結合表示S-S結合表示   背景・黒 灰 白 


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